Human

Human Kidney Gene DataBase

Name polycystic kidney and hepatic disease 1 (autosomal recessive)
Symbol PKHD1
Aliases FCYT; ARPKD; TIGM1; tigmin; polyductin; fibrocystin; TIG multiple domains 1
Gene Product
  • polycystic kidney and hepatic disease 1 isoform 1
  • polycystic kidney and hepatic disease 1 isoform 2
Category
UniGene Hs.143943 
Reference Sequence
mRNA: NM_170724 Protein: NP_733842
OMIM and SNP
OMIM: 606702 SNP: NCBI SNP
Locus
LocusLink: 5314Chromosome: 6Cytoband: 6p12.2 UCSC Genome Map Eesembl Genome Map
SummaryThe protein encoded by this gene is predicted to have a single transmembrane (TM)-spanning domain and multiple copies of an immunoglobulin-like plexin-transcription-factor domain. Alternative splicing results in two transcript variants encoding different isoforms. Other alternatively spliced transcripts have been described, but the full length sequences have not been determined. Several of these transcripts are predicted to encode truncated products which lack the TM and may be secreted. Mutations in this gene cause autosomal recessive polycystic kidney disease, also known as polycystic kidney and hepatic disease-1.
Gene Ontology
Expression
EST (38 ESTs, 21 libraries)
Tissue Breadth ? CPM ?
eyeBreadth of expression: 1 out of  24 libraries express this gene (4.17%)Average CPM:1.50
germ cellBreadth of expression: 1 out of  6 libraries express this gene (16.67%)Average CPM:0.73
kidneyBreadth of expression: 3 out of  145 libraries express this gene (2.07%)Average CPM:289.18
lungBreadth of expression: 3 out of  334 libraries express this gene (0.90%)Average CPM:1.44
muscleBreadth of expression: 1 out of  83 libraries express this gene (1.20%)Average CPM:4.92
pancreasBreadth of expression: 1 out of  20 libraries express this gene (5.00%)Average CPM:1.21
stomachBreadth of expression: 1 out of  310 libraries express this gene (0.32%)Average CPM:1.48
testisBreadth of expression: 2 out of  180 libraries express this gene (1.11%)Average CPM:1.22
uncharacterized tissueBreadth of expression: 6 out of  1739 libraries express this gene (0.35%)Average CPM:6.29
SAGE (3668159 tags, 66 libraries)
Tissue Breadth ? CPM ?
brainBreadth of expression: 16 out of  30 libraries express this gene (53.33%)Average CPM:28.62
cerebellumBreadth of expression: 1 out of  1 libraries express this gene (100.00%)Average CPM:19.50
colonBreadth of expression: 2 out of  8 libraries express this gene (25.00%)Average CPM:26.34
eyeBreadth of expression: 3 out of  6 libraries express this gene (50.00%)Average CPM:15.17
kidneyBreadth of expression: 1 out of  3 libraries express this gene (33.33%)Average CPM:45.95
mammary glandBreadth of expression: 4 out of  20 libraries express this gene (20.00%)Average CPM:40.82
muscleBreadth of expression: 2 out of  2 libraries express this gene (100.00%)Average CPM:18.57
nervousBreadth of expression: 1 out of  1 libraries express this gene (100.00%)Average CPM:36.09
ovaryBreadth of expression: 2 out of  10 libraries express this gene (20.00%)Average CPM:53.32
pancreasBreadth of expression: 3 out of  8 libraries express this gene (37.50%)Average CPM:28.36
prostateBreadth of expression: 5 out of  14 libraries express this gene (35.71%)Average CPM:26.69
skinBreadth of expression: 2 out of  7 libraries express this gene (28.57%)Average CPM:71.98
stomachBreadth of expression: 1 out of  4 libraries express this gene (25.00%)Average CPM:15.60
uncharacterized tissueBreadth of expression: 10 out of  20 libraries express this gene (50.00%)Average CPM:29.54
vascularBreadth of expression: 2 out of  3 libraries express this gene (66.67%)Average CPM:29.20
EvidenceMutation in Kidney Cystic Disease

Other key publications related to this gene


© 2004, KGDB, All Rights Reserved.
Department of Urology
University of California, San Francisco