Human

Human Kidney Gene DataBase

Name nephronophthisis 1 (juvenile)
Symbol NPHP1
Aliases NPH1; SLSN1
Gene Product
  • nephrocystin isoform 1
  • nephrocystin isoform 2
Category
UniGene Hs.280388 
Reference Sequence
mRNA: NM_207181 Protein: NP_997064
OMIM and SNP
OMIM: 607100 SNP: NCBI SNP
Locus
LocusLink: 4867Chromosome: 2Cytoband: 2q13 UCSC Genome Map Eesembl Genome Map
SummaryThis gene encodes a protein with src homology domain 3 (SH3) patterns. Mutations in this gene cause familial juvenile nephronophthisis.
Gene Ontology
Expression
EST (54 ESTs, 34 libraries)
Tissue Breadth ? CPM ?
boneBreadth of expression: 3 out of  24 libraries express this gene (12.50%)Average CPM:3.67
brainBreadth of expression: 4 out of  759 libraries express this gene (0.53%)Average CPM:7.08
cartilageBreadth of expression: 3 out of  16 libraries express this gene (18.75%)Average CPM:6.04
eyeBreadth of expression: 2 out of  24 libraries express this gene (8.33%)Average CPM:1.83
germ cellBreadth of expression: 1 out of  6 libraries express this gene (16.67%)Average CPM:0.51
kidneyBreadth of expression: 2 out of  145 libraries express this gene (1.38%)Average CPM:1.48
lungBreadth of expression: 3 out of  334 libraries express this gene (0.90%)Average CPM:2.55
muscleBreadth of expression: 2 out of  83 libraries express this gene (2.41%)Average CPM:1.71
ovaryBreadth of expression: 1 out of  170 libraries express this gene (0.59%)Average CPM:8.37
parathyroidBreadth of expression: 1 out of  2 libraries express this gene (50.00%)Average CPM:1.79
skinBreadth of expression: 1 out of  38 libraries express this gene (2.63%)Average CPM:2.71
testisBreadth of expression: 3 out of  180 libraries express this gene (1.67%)Average CPM:0.97
uncharacterized tissueBreadth of expression: 7 out of  1739 libraries express this gene (0.40%)Average CPM:176.37
whole bodyBreadth of expression: 1 out of  12 libraries express this gene (8.33%)Average CPM:1.50
SAGE (137540 tags, 2 libraries)
Tissue Breadth ? CPM ?
eyeBreadth of expression: 1 out of  6 libraries express this gene (16.67%)Average CPM:9.77
mesothelial tissueBreadth of expression: 1 out of  1 libraries express this gene (100.00%)Average CPM:28.42
EvidenceDeletion in Nephronophthisis

Other key publications related to this gene


© 2004, KGDB, All Rights Reserved.
Department of Urology
University of California, San Francisco