Human

Human Kidney Gene DataBase

Name von Hippel-Lindau syndrome
Symbol VHL
Aliases RCA1; HRCA1; elongin binding protein
Gene Product
  • von Hippel-Lindau tumor suppressor isoform 2
  • von Hippel-Lindau tumor suppressor isoform 1
Category
UniGene Hs.421597 
Reference Sequence
mRNA: NM_198156 Protein: NP_937799
OMIM and SNP
OMIM: 608537 SNP: NCBI SNP
Locus
LocusLink: 7428Chromosome: 3Cytoband: 3p26-p25 UCSC Genome Map Eesembl Genome Map
SummaryVon Hippel-Lindau syndrome (VHL) is a dominantly inherited familial cancer syndrome predisposing to a variety of malignant and benign tumors. A germline mutation of this gene is the basis of familial inheritance of VHL syndrome. The protein encoded by this gene is a component of the protein complex that includes elongin B, elongin C, and cullin-2, and possesses ubiquitin ligase E3 activity. This protein is involved in the ubiquitination and degradation of hypoxia-inducible-factor (HIF), which is a transcription factor that plays a central role in the regulation of gene expression by oxygen. RNA polymerase II subunit POLR2G/RPB7 is also reported to be a target of this protein. Alternatively spliced transcript variants encoding distinct isoforms have been observed.
Gene Ontology
Expression
EST (79 ESTs, 50 libraries)
Tissue Breadth ? CPM ?
brainBreadth of expression: 5 out of  759 libraries express this gene (0.66%)Average CPM:0.97
colonBreadth of expression: 3 out of  930 libraries express this gene (0.32%)Average CPM:32.29
eyeBreadth of expression: 1 out of  24 libraries express this gene (4.17%)Average CPM:1.17
germ cellBreadth of expression: 1 out of  6 libraries express this gene (16.67%)Average CPM:1.05
head and neckBreadth of expression: 3 out of  680 libraries express this gene (0.44%)Average CPM:284.45
heartBreadth of expression: 1 out of  26 libraries express this gene (3.85%)Average CPM:1.05
kidneyBreadth of expression: 1 out of  145 libraries express this gene (0.69%)Average CPM:0.33
liverBreadth of expression: 2 out of  65 libraries express this gene (3.08%)Average CPM:0.94
lungBreadth of expression: 4 out of  334 libraries express this gene (1.20%)Average CPM:0.69
mammary glandBreadth of expression: 1 out of  1038 libraries express this gene (0.10%)Average CPM:92.40
muscleBreadth of expression: 1 out of  83 libraries express this gene (1.20%)Average CPM:2.60
nervousBreadth of expression: 1 out of  21 libraries express this gene (4.76%)Average CPM:2.29
oral cavityBreadth of expression: 1 out of  13 libraries express this gene (7.69%)Average CPM:2.96
ovaryBreadth of expression: 1 out of  170 libraries express this gene (0.59%)Average CPM:124.10
placentaBreadth of expression: 4 out of  358 libraries express this gene (1.12%)Average CPM:4.06
prostateBreadth of expression: 2 out of  309 libraries express this gene (0.65%)Average CPM:109.12
skinBreadth of expression: 1 out of  38 libraries express this gene (2.63%)Average CPM:24.82
stomachBreadth of expression: 1 out of  310 libraries express this gene (0.32%)Average CPM:6.41
testisBreadth of expression: 1 out of  180 libraries express this gene (0.56%)Average CPM:0.53
uncharacterized tissueBreadth of expression: 11 out of  1739 libraries express this gene (0.63%)Average CPM:0.45
vascularBreadth of expression: 1 out of  18 libraries express this gene (5.56%)Average CPM:68.42
whole bodyBreadth of expression: 1 out of  12 libraries express this gene (8.33%)Average CPM:1.03
EvidenceCpG Methylation in Kidney Neoplasms CpG Methylation in System Syndrom with Kidney Involvment Deletion in Kidney Neoplasms Deletion in System Syndrom with Kidney Involvment LOH in Kidney Neoplasms Mutation in Kidney Neoplasms Mutation in System Syndrom with Kidney Involvment

Other key publications related to this gene


© 2004, KGDB, All Rights Reserved.
Department of Urology
University of California, San Francisco